Competing risks refer to the situation where there are multiple causes of failure and the occurrence of one type of event prohibits the occurrence of the other types of event or alters the chance to observe them. In large cohort studies with long-term follow-up, there are often competing risks. When the failure events are rare, or the information on certain risk factors is difficult or costly to measure for the full cohort, a case-cohort study design can be a desirable approach. In this paper, we consider a semiparametric proportional subdistribution hazards model in the presence of competing risks in case-cohort studies. The subdistribution hazards function, unlike the cause-specific hazards function, gives the advantage of outlining the marginal probability of a particular type of event. We propose estimating equations based on inverse probability weighting techniques for the estimation of the model parameters. In the estimation methods, we considered a weighted availability indicator to properly account for the case-cohort sampling scheme. We also proposed a Breslow-type estimator for the cumulative baseline subdistribution hazard function. The resulting estimators are shown, using empirical processes and martingale properties, to be consistent and asymptotically normally distributed. The performance of the proposed methods in finite samples are examined through simulation studies by considering different levels of censoring and event of interest percentages. The simulation results from the different scenarios suggest that the parameter estimates are reasonably close to the true values of the respective parameters in the model. Finally, the proposed estimation methods are applied to a case-cohort sample from the Sister Study, in which we illustrated the proposed methods by studying the association between selected CpGs and invasive breast cancer in the presence of ductal carcinoma in situ as competing risk.
Published in | American Journal of Applied Mathematics (Volume 9, Issue 5) |
DOI | 10.11648/j.ajam.20210905.12 |
Page(s) | 165-185 |
Creative Commons |
This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited. |
Copyright |
Copyright © The Author(s), 2021. Published by Science Publishing Group |
Case-cohort Study, Competing Risks, Inverse Probability of Censoring Weight, Subdistribution Hazard, Weighted Estimating Equation
[1] | Prentice, R. L. (1986). A case-cohort design for epidemiologic cohort studies and disease prevention trials. Biometrika, 73, 1-11. |
[2] | Sandler, D. P., Hodgson, M. E., Deming-Halverson, S. L., Juras, P. S., D’Aloisio, A. A., Suarez, L. M., et al. (2017). The Sister Study cohort: Baseline methods and participant characteristics. Environmental Health Perspectives, 125, 127003. |
[3] | Narod, S. A., Iqbal, J., Giannakeas, V., Sopik, V., and Sun, P. (2015). Breast cancer mortality after a diagnosis of ductal carcinoma in situ. JAMA Oncology, 1, 888-896. |
[4] | Prentice, R. L., Kalbfleisch, J. D., Peterson, A. V. Jr., Flournoy, N., Farewell, V., and Breslow, N. E. (1978). The analysis of failure times in the presence of competing risks. Biometrics, 34, 541-554. |
[5] | Fine, J. P. and Gray, R. J. (1999). A proportional hazards model for the subdistribution of a competing risk. Journal of the American Statistical Association, 94, 496-509. |
[6] | Kalbfleisch, J. D. and Prentice, R. L. (2002). The Statistical Analysis ofFailure Time Data, Second Edition. John Wiley & Sons, New York. |
[7] | Kim, H. T. (2007). Cumulative incidence in competing risks data and competing risks regression analysis. Clinical Cancer Research, 13, 559-565. |
[8] | Koller, M. T., Raatz, H., Steyerberg, E. W., and Wolbers, M. (2012). Competing risks and the clinical community: irrelevance or ignorance? Statistics in Medicine, 31, 1089-1097. |
[9] | Austin, P. C., Lee, D. S., and Fine, J. P. (2016). Introduction to the analysis of survival data in the presence of competing risks. Circulation, 133, 601-609. |
[10] | Self, S. G. and Prentice, R. L. (1988). Asymptotic distribution theory and efficiency results for case-cohort studies. The Annals of Statistics, 16, 64-81. |
[11] | Barlow, W. E., Ichikawa, L., Rosner, D., and Izumi, S. (1999). Analysis of case-cohort designs. Journal of Clinical Epidemiology, 52, 1165-1172. |
[12] | Chen, K. and Lo, S. H. (1999). Case-cohort and case- control analysis with Cox’s model. Biometrika, 86, 755- 764. |
[13] | Borgan, O., Langholz, B., Samuelsen, S. O., Goldstein, L., and Pogoda, J. (2000). Exposure stratified case-cohort designs. Lifetime Data Analysis, 6, 39-58. |
[14] | Kulich, M. and Lin, D. Y. (2000). Additive hazards regression for case-cohort studies. Biometrika, 87, 73-87. |
[15] | Kang, S. and Cai, J. (2009). Marginal hazards model for case-cohort studies with multiple disease outcomes. Biometrika, 96, 887-901. |
[16] | Kong, L. and Cai, J. (2009). Case-cohort analysis with accelerated failure time model. Biometrics, 65, 135-142. |
[17] | Sørensen, P. and Andersen, P. K. (2000). Competing risks analysis of the case-cohort design. Biometrika, 87, 49-59. |
[18] | Sun, J., Sun, L., and Flournoy, N. (2004). Additive hazards models for competing risks analysis of the case- cohort design. Communications in Statistics, 33, 351- 366. |
[19] | Wolkewitz, M., Palomar-Martinez, M., Olaechea- Astigarraga, P., Alvarez-Lerma, F., and Schumacher, M. (2016). A full competing risk analysis of hospital- acquired infections can easily be performed by a case- cohort approach. Journal of Clinical Epidemiology, 74, 187-193. |
[20] | Gray, R. J. (1988). A class of K-sample tests for comparing the cumulative incidence of a competing risk. The Annals of Statistics, 16, 1141-1154. |
[21] | Robins, J. M. and Rotnitzky, A. (1992). Recovery of information and adjustment for dependent censoring using surrogate markers. In AIDS Epidemiology: Methodological Issues, eds. N. Jewell, K. Dietz, and V. Farewell. Birkhäuser, Boston, 24-33. |
[22] | Andersen, P. K. and Gill, R. D. (1982). Cox’s regression model for counting processed: A large sample study. The Annals of Statistics, 10, 1100-1120. |
[23] | Foutz, R. V. (1977). On the unique consistent solution to the likelihood equations. Journal of the American Statistical Association, 72, 147-148. |
[24] | Kulich, M. and Lin, D. Y. (2004). Improving the efficiency of relative-risk estimation in case-cohort studies. Journal of the American Statistical Association, 99, 832-844. |
[25] | D’Aloisio, A. A., Nichols, H. B., Hodgson, M. E., Deming-Halverson, S. L. and Sandler, D. P. (2017). Validity of self-reported breast cancer characteristics in a nationwide cohort of women with a family history of breast cancer. BMC Cancer, 17, 692. |
[26] | Xu, Z., Bolick, S. C., DeRoo, L. A., Weinberg, C. R., Sandler, D. P., and Taylor, J. A. (2013). Epigenome-wide association study of breast cancer using prospectively collected sister study samples. Journal of the National Cancer Institute, 105, 694-700. |
[27] | Du, P., Zhang, X., Huang, C. C., Jafari, N., Kibbe, W. A., Hou, L. et al. (2010). Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinformatics, 11, 587. |
[28] | White, A. J., Nichols, H. B., Bradshaw, P. T., and Sandler, D. P. (2015). Overall and central adiposity and breast cancer risk in the sister study. Cancer, 121, 3700-3708. |
[29] | Geskus, R. B. (2011). Cause-specific cumulative incidence estimation and the Fine and Gray model under both left truncation and right censoring. Biometrics, 67, 39-49. |
[30] | Chen, K. (2001). Generalized case-cohort sampling. Journal of the Royal Statistical Society, Series B, 63, 791- 809. |
APA Style
Adane Fekadu Wogu, Shanshan Zhao, Hazel Bogan Nichols, Jianwen Cai. (2021). Proportional Subdistribution Hazards Model for Competing Risks in Case-Cohort Studies. American Journal of Applied Mathematics, 9(5), 165-185. https://doi.org/10.11648/j.ajam.20210905.12
ACS Style
Adane Fekadu Wogu; Shanshan Zhao; Hazel Bogan Nichols; Jianwen Cai. Proportional Subdistribution Hazards Model for Competing Risks in Case-Cohort Studies. Am. J. Appl. Math. 2021, 9(5), 165-185. doi: 10.11648/j.ajam.20210905.12
AMA Style
Adane Fekadu Wogu, Shanshan Zhao, Hazel Bogan Nichols, Jianwen Cai. Proportional Subdistribution Hazards Model for Competing Risks in Case-Cohort Studies. Am J Appl Math. 2021;9(5):165-185. doi: 10.11648/j.ajam.20210905.12
@article{10.11648/j.ajam.20210905.12, author = {Adane Fekadu Wogu and Shanshan Zhao and Hazel Bogan Nichols and Jianwen Cai}, title = {Proportional Subdistribution Hazards Model for Competing Risks in Case-Cohort Studies}, journal = {American Journal of Applied Mathematics}, volume = {9}, number = {5}, pages = {165-185}, doi = {10.11648/j.ajam.20210905.12}, url = {https://doi.org/10.11648/j.ajam.20210905.12}, eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.ajam.20210905.12}, abstract = {Competing risks refer to the situation where there are multiple causes of failure and the occurrence of one type of event prohibits the occurrence of the other types of event or alters the chance to observe them. In large cohort studies with long-term follow-up, there are often competing risks. When the failure events are rare, or the information on certain risk factors is difficult or costly to measure for the full cohort, a case-cohort study design can be a desirable approach. In this paper, we consider a semiparametric proportional subdistribution hazards model in the presence of competing risks in case-cohort studies. The subdistribution hazards function, unlike the cause-specific hazards function, gives the advantage of outlining the marginal probability of a particular type of event. We propose estimating equations based on inverse probability weighting techniques for the estimation of the model parameters. In the estimation methods, we considered a weighted availability indicator to properly account for the case-cohort sampling scheme. We also proposed a Breslow-type estimator for the cumulative baseline subdistribution hazard function. The resulting estimators are shown, using empirical processes and martingale properties, to be consistent and asymptotically normally distributed. The performance of the proposed methods in finite samples are examined through simulation studies by considering different levels of censoring and event of interest percentages. The simulation results from the different scenarios suggest that the parameter estimates are reasonably close to the true values of the respective parameters in the model. Finally, the proposed estimation methods are applied to a case-cohort sample from the Sister Study, in which we illustrated the proposed methods by studying the association between selected CpGs and invasive breast cancer in the presence of ductal carcinoma in situ as competing risk.}, year = {2021} }
TY - JOUR T1 - Proportional Subdistribution Hazards Model for Competing Risks in Case-Cohort Studies AU - Adane Fekadu Wogu AU - Shanshan Zhao AU - Hazel Bogan Nichols AU - Jianwen Cai Y1 - 2021/09/09 PY - 2021 N1 - https://doi.org/10.11648/j.ajam.20210905.12 DO - 10.11648/j.ajam.20210905.12 T2 - American Journal of Applied Mathematics JF - American Journal of Applied Mathematics JO - American Journal of Applied Mathematics SP - 165 EP - 185 PB - Science Publishing Group SN - 2330-006X UR - https://doi.org/10.11648/j.ajam.20210905.12 AB - Competing risks refer to the situation where there are multiple causes of failure and the occurrence of one type of event prohibits the occurrence of the other types of event or alters the chance to observe them. In large cohort studies with long-term follow-up, there are often competing risks. When the failure events are rare, or the information on certain risk factors is difficult or costly to measure for the full cohort, a case-cohort study design can be a desirable approach. In this paper, we consider a semiparametric proportional subdistribution hazards model in the presence of competing risks in case-cohort studies. The subdistribution hazards function, unlike the cause-specific hazards function, gives the advantage of outlining the marginal probability of a particular type of event. We propose estimating equations based on inverse probability weighting techniques for the estimation of the model parameters. In the estimation methods, we considered a weighted availability indicator to properly account for the case-cohort sampling scheme. We also proposed a Breslow-type estimator for the cumulative baseline subdistribution hazard function. The resulting estimators are shown, using empirical processes and martingale properties, to be consistent and asymptotically normally distributed. The performance of the proposed methods in finite samples are examined through simulation studies by considering different levels of censoring and event of interest percentages. The simulation results from the different scenarios suggest that the parameter estimates are reasonably close to the true values of the respective parameters in the model. Finally, the proposed estimation methods are applied to a case-cohort sample from the Sister Study, in which we illustrated the proposed methods by studying the association between selected CpGs and invasive breast cancer in the presence of ductal carcinoma in situ as competing risk. VL - 9 IS - 5 ER -